MS Bioinformatics & Computational Biology

Hi, I’m Tushar, I’m currently exploring how machine learning and deep learning can be applied to biological data, with a growing focus on cancer research, immunogenomics, and transcriptomics.

My work so far includes projects on immune receptor sequence analysis, single-nucleus RNA-seq profiling, and structural characterization of CDR3 regions. I'm learning to build scalable, reproducible pipelines using tools like Nextflow, Docker, and HPC, and I enjoy tackling real-world biomedical data challenges as I continue developing my skills.

Skills

Bioinformatics

Seurat

Scanpy

Bioconductor

STAR

BEDTools

Bowtie2

MiXCR

VDJdb

DESeq2

GATK

SAMtools

BLAST

AI & Machine Learning

scikit-learn

XGBoost

Random Forest

SVM

LSTM

Transformer

Attention

PyTorch

TensorFlow

Keras

SHAP

Pipelines & Reproducibility

Nextflow

Docker

Singularity

Conda

AWS

Statistical & Survival Analysis

Kaplan–Meier

Cox Regression

Fisher's Exact Test

Log-Rank Test

Data Tools & HPC

Slurm

GDC Toolkit

Pandas

NumPy

Visualization

Matplotlib

Seaborn

ggplot2

UMAP

t-SNE